The Primary Information of Cyclic Nucleotide-regulated Channels (CNG)
1. Summary
Cyclic nucleotide-gated (CNG) channels are ion channels which are activated by the binding of cGMP or cAMP [1]. Cyclic nucleotide gated channel contains two kind subunits, alpha-subunit (alpha 1, alpha 2, alpha 3, alpha 4) and beta-subunit (beta 1, beta 3).
A CNG channel consists of four subunits around a central pore. Each protein subunit consists 6 transmembrane segments (S1-S6), a P-loop, intracellular amino terminal region, and carboxy terminal region. The P-loop and S6 segments around the pore, which plays a role in ion conduction. There is a cyclic nucleotide binding domain (CNBD) and connection region to the S6 segment in the carboxy terminal. There is a post-CNDB region in the amino terminal [2].
2. Binding Sites
The channel contains three CNGA3 and one CNGB3 subunits. Arg403 (yellow sphere) in the pore helix of CNGB3 projects into an asymmetric selectivity filter and forms hydrogen bonds with two pore-lining backbone carbonyl oxygens. Arg442 in S6 of CNGB3 protrudes into and occludes the pore below the hydrophobic cavity gate previously observed in homotetrameric CNGA channels. It is interesting that Arg403Gln is a disease mutation, and Arg442 is replaced by glutamine in some animal species with dichromatic or monochromatic vision [3].
3. Target List
| ICDB_Pro ID | Protein Name | Organism | Uniport Accession Number | Gene Name |
|---|---|---|---|---|
| ICDB_Pro_0242 | Cyclic nucleotide-gated ion channel 1 | Arabidopsis thaliana (Mouse-ear cress) | O65717 | CNGC1 At5g53130 MFH8.6 |
| ICDB_Pro_1632 | Cyclic nucleotide-gated ion channel 11 | Arabidopsis thaliana (Mouse-ear cress) | Q9SKD6 | CNGC11 At2g46440 F11C10.13 |
| ICDB_Pro_1268 | Cyclic nucleotide-gated ion channel 17 | Arabidopsis thaliana (Mouse-ear cress) | Q8L7Z0 | CNGC17 At4g30360 F17I23_300 |
| ICDB_Pro_1553 | Cyclic nucleotide-gated ion channel 18 | Arabidopsis thaliana (Mouse-ear cress) | Q9LEQ3 | CNGC18 At5g14870 T9L3_170 |
| ICDB_Pro_0243 | Cyclic nucleotide-gated ion channel 2 | Arabidopsis thaliana (Mouse-ear cress) | O65718 | CNGC2 DND1 At5g15410 T20K14_20 |
| ICDB_Pro_1386 | Cyclic nucleotide-gated ion channel 4 | Arabidopsis thaliana (Mouse-ear cress) | Q94AS9 | CNGC4 HLM1 At5g54250 MDK4.7 |
| ICDB_Pro_1415 | Cyclic nucleotide-gated potassium channel mll3241 | Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) (Mesorhizobium loti (strain MAFF 303099)) | Q98GN8 | mll3241 |
| ICDB_Pro_0896 | Cyclic nucleotide-gated potassium channel RHE_CH03180 | Rhizobium etli (strain ATCC 51251 / DSM 11541 / JCM 21823 / NBRC 15573 / CFN 42) | Q2K5E1 | RHE_CH03180 |
| ICDB_Pro_1556 | Probable cyclic nucleotide-gated ion channel 10 | Arabidopsis thaliana (Mouse-ear cress) | Q9LNJ0 | CNGC10 ACBK1 At1g01340 F6F3.13 |
| ICDB_Pro_1631 | Probable cyclic nucleotide-gated ion channel 14 | Arabidopsis thaliana (Mouse-ear cress) | Q9SJA4 | CNGC14 At2g24610 F25P17.9 |